HL_7S9U_023

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUGAAAAG

Length

10 nucleotides

Bulged bases

7S9U|1|A|U|793, 7S9U|1|A|U|794, 7S9U|1|A|A|798, 7S9U|1|A|A|799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_023 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1417

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

7S9U|1|A|C|791
7S9U|1|A|G|792
7S9U|1|A|U|793
7S9U|1|A|U|794
7S9U|1|A|G|795
7S9U|1|A|A|796
7S9U|1|A|A|797
7S9U|1|A|A|798
7S9U|1|A|A|799
7S9U|1|A|G|800

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32

Chain d

50S ribosomal protein L34