HL_7S9U_033

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7S9U|1|A|C|1364, 7S9U|1|A|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1083

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7S9U|1|A|G|1363
7S9U|1|A|C|1364
7S9U|1|A|U|1365
7S9U|1|A|C|1366
7S9U|1|A|G|1367
7S9U|1|A|U|1368
7S9U|1|A|C|1369

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22