HL_7S9U_035

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

7S9U|1|A|U|1435, 7S9U|1|A|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_035 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1581

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7S9U|1|A|G|1428
7S9U|1|A|U|1429
7S9U|1|A|U|1430
7S9U|1|A|G|1431
7S9U|1|A|A|1432
7S9U|1|A|U|1433
7S9U|1|A|A|1434
7S9U|1|A|U|1435
7S9U|1|A|U|1436
7S9U|1|A|C|1437

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain T

50S ribosomal protein L23