HL_7S9U_036

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAUUGGAUAU

Length

12 nucleotides

Bulged bases

7S9U|1|A|A|1499, 7S9U|1|A|U|1500, 7S9U|1|A|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_036 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2726

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7S9U|1|A|G|1496
7S9U|1|A|G|1497
7S9U|1|A|U|1498
7S9U|1|A|A|1499
7S9U|1|A|U|1500
7S9U|1|A|U|1501
7S9U|1|A|G|1502
7S9U|1|A|G|1503
7S9U|1|A|A|1504
7S9U|1|A|U|1505
7S9U|1|A|A|1506
7S9U|1|A|U|1507

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain N

50S ribosomal protein L17