HL_7S9U_040

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7S9U|1|A|A|1659, 7S9U|1|A|A|1661, 7S9U|1|A|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_040 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1315

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7S9U|1|A|C|1657
7S9U|1|A|G|1658
7S9U|1|A|A|1659
7S9U|1|A|C|1660
7S9U|1|A|A|1661
7S9U|1|A|C|1662
7S9U|1|A|A|1663
7S9U|1|A|G|1664

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34