HL_7S9U_048

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7S9U|1|A|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.152

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

7S9U|1|A|G|2056
7S9U|1|A|U|2057
7S9U|1|A|G|2058
7S9U|1|A|A|2059
7S9U|1|A|A|2060
7S9U|1|A|G|2061
7S9U|1|A|A|2062
7S9U|1|A|U|2063
7S9U|1|A|G|2064
7S9U|1|A|C|2065

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain R

50S ribosomal protein L21

Chain b

50S ribosomal protein L32