HL_7S9U_071

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7S9U|1|A|A|2296, 7S9U|1|A|A|2297, 7S9U|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_071 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.18

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7S9U|1|A|C|2293
7S9U|1|A|U|2294
7S9U|1|A|A|2295
7S9U|1|A|A|2296
7S9U|1|A|A|2297
7S9U|1|A|A|2298
7S9U|1|A|G|2299
7S9U|1|A|G|2300
7S9U|1|A|U|2301
7S9U|1|A|A|2302
7S9U|1|A|A|2303
7S9U|1|A|C|2304
7S9U|1|A|G|2305

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain V

50S ribosomal protein L27