HL_7SA4_025

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SA4_025 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.2364

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

7SA4|1|1|C|885
7SA4|1|1|A|886
7SA4|1|1|A|887
7SA4|1|1|C|888
7SA4|1|1|C|889
7SA4|1|1|C|890
7SA4|1|1|G|891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13