HL_7SA4_046

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

7SA4|1|1|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SA4_046 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.0931

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7SA4|1|1|C|1806
7SA4|1|1|G|1807
7SA4|1|1|A|1808
7SA4|1|1|A|1809
7SA4|1|1|A|1810
7SA4|1|1|G|1811

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain X

50S ribosomal protein L28