HL_7SAE_018

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUUGUAGAA

Length

10 nucleotides

Bulged bases

7SAE|1|A|A|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SAE_018 not in the Motif Atlas

Homologous match to HL_5J7L_150

Geometric discrepancy: 0.2045

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7SAE|1|A|U|610
7SAE|1|A|U|611
7SAE|1|A|U|612
7SAE|1|A|U|613
7SAE|1|A|G|614
7SAE|1|A|U|615
7SAE|1|A|A|616
7SAE|1|A|G|617
7SAE|1|A|A|618
7SAE|1|A|A|619

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain L

50S ribosomal protein L15

Chain R

50S ribosomal protein L21