HL_7SAE_032

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SAE_032 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1157

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7SAE|1|A|G|1320
7SAE|1|A|U|1321
7SAE|1|A|G|1322
7SAE|1|A|A|1323
7SAE|1|A|G|1324
7SAE|1|A|A|1325
7SAE|1|A|A|1326
7SAE|1|A|U|1327
7SAE|1|A|C|1328

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32