HL_7SS9_016

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

7SS9|1|1|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_016 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3336

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7SS9|1|1|U|566
7SS9|1|1|U|567
7SS9|1|1|U|568
7SS9|1|1|U|569
7SS9|1|1|G|570
7SS9|1|1|U|571
7SS9|1|1|A|572
7SS9|1|1|U|573
7SS9|1|1|A|574
7SS9|1|1|A|575

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain l

50S ribosomal protein L15

Chain r

50S ribosomal protein L21