HL_7SS9_034

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7SS9|1|1|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.3063

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7SS9|1|1|G|1389
7SS9|1|1|U|1390
7SS9|1|1|U|1391
7SS9|1|1|A|1392
7SS9|1|1|A|1393
7SS9|1|1|U|1394
7SS9|1|1|A|1395
7SS9|1|1|U|1396
7SS9|1|1|U|1397
7SS9|1|1|C|1398

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23