HL_7SS9_080

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_080 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3094

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7SS9|1|3|G|377
7SS9|1|3|G|378
7SS9|1|3|C|379
7SS9|1|3|G|380
7SS9|1|3|C|381
7SS9|1|3|A|382
7SS9|1|3|A|383
7SS9|1|3|G|384
7SS9|1|3|C|385
7SS9|1|3|C|386

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain Y

30S ribosomal protein S20