HL_7SS9_101

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_101 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.3257

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7SS9|1|3|G|1515
7SS9|1|3|G|1516
7SS9|1|3|G|1517
7SS9|1|3|A|1518
7SS9|1|3|A|1519
7SS9|1|3|C|1520

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA