HL_7SS9_105

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

7SS9|1|6|G|18, 7SS9|1|6|G|19, 7SS9|1|6|U|20, 7SS9|1|6|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_105 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.3208

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SS9|1|6|C|13
7SS9|1|6|A|14
7SS9|1|6|G|15
7SS9|1|6|C|16
7SS9|1|6|C|17
7SS9|1|6|U|17|||A
7SS9|1|6|G|18
7SS9|1|6|G|19
7SS9|1|6|U|20
7SS9|1|6|A|21
7SS9|1|6|G|22

Current chains

Chain 6

tRNA fMet

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA