HL_7SS9_123

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7SS9|1|3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_123 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.578

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7SS9|1|3|G|462
7SS9|1|3|U|463
7SS9|1|3|U|464
7SS9|1|3|A|465
7SS9|1|3|A|466
7SS9|1|3|U|467
7SS9|1|3|A|468
7SS9|1|3|C|469
7SS9|1|3|C|470

Current chains

Chain 3

16S rRNA

Nearby chains