HL_7SSD_017

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

7SSD|1|1|A|613, 7SSD|1|1|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_017 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.3285

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

7SSD|1|1|C|611
7SSD|1|1|G|612
7SSD|1|1|A|613
7SSD|1|1|A|614
7SSD|1|1|U|615
7SSD|1|1|A|616
7SSD|1|1|G|617

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4