HL_7SSD_022

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

7SSD|1|1|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_022 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.187

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

7SSD|1|1|U|779
7SSD|1|1|G|780
7SSD|1|1|A|781
7SSD|1|1|A|782
7SSD|1|1|A|783
7SSD|1|1|G|784
7SSD|1|1|G|785

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2