HL_7SSD_029

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

7SSD|1|1|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_029 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3646

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7SSD|1|1|G|1171
7SSD|1|1|C|1172
7SSD|1|1|U|1173
7SSD|1|1|U|1174
7SSD|1|1|A|1175
7SSD|1|1|U|1176
7SSD|1|1|G|1177
7SSD|1|1|C|1178

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15