3D structure

PDB id
7SSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid translocation intermediate with EF-G bound with GDP (Structure IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCGACGGUUGUC
Length
12 nucleotides
Bulged bases
7SSD|1|1|A|1453, 7SSD|1|1|C|1454, 7SSD|1|1|U|1460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SSD_035 not in the Motif Atlas
Geometric match to HL_5J7L_200
Geometric discrepancy: 0.3424
The information below is about HL_5J7L_200
Detailed Annotation
Other HL
Broad Annotation
Other HL
Motif group
HL_08100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

7SSD|1|1|G|1450
7SSD|1|1|C|1451
7SSD|1|1|G|1452
7SSD|1|1|A|1453
7SSD|1|1|C|1454
7SSD|1|1|G|1455
7SSD|1|1|G|1456
7SSD|1|1|U|1457
7SSD|1|1|U|1458
7SSD|1|1|G|1459
7SSD|1|1|U|1460
7SSD|1|1|C|1461

Current chains

Chain 1
23S rRNA

Nearby chains

Chain n
50S ribosomal protein L17

Coloring options:


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