HL_7SSD_039

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7SSD|1|1|A|1614, 7SSD|1|1|A|1616, 7SSD|1|1|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_039 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.17

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7SSD|1|1|C|1612
7SSD|1|1|G|1613
7SSD|1|1|A|1614
7SSD|1|1|C|1615
7SSD|1|1|A|1616
7SSD|1|1|C|1617
7SSD|1|1|A|1618
7SSD|1|1|G|1619

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain s

50S ribosomal protein L22