HL_7SSD_046

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_046 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.201

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7SSD|1|1|C|1868
7SSD|1|1|G|1869
7SSD|1|1|C|1870
7SSD|1|1|A|1871
7SSD|1|1|A|1872
7SSD|1|1|G|1873

Current chains

Chain 1

23S rRNA

Nearby chains