HL_7SSD_048

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7SSD|1|1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1167

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

7SSD|1|1|G|1949
7SSD|1|1|G|1950
7SSD|1|1|U|1951
7SSD|1|1|A|1952
7SSD|1|1|A|1953
7SSD|1|1|G|1954
7SSD|1|1|U|1955
7SSD|1|1|U|1956
7SSD|1|1|C|1957

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain k

50S ribosomal protein L14