HL_7SSD_065
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 7SSD|1|1|G|2751, 7SSD|1|1|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SSD_065 not in the Motif Atlas
- Homologous match to HL_4WF9_062
- Geometric discrepancy: 0.1355
- The information below is about HL_4WF9_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
7SSD|1|1|C|2745
7SSD|1|1|U|2746
7SSD|1|1|G|2747
7SSD|1|1|A|2748
7SSD|1|1|A|2749
7SSD|1|1|A|2750
7SSD|1|1|G|2751
7SSD|1|1|C|2752
7SSD|1|1|A|2753
7SSD|1|1|U|2754
7SSD|1|1|C|2755
7SSD|1|1|U|2756
7SSD|1|1|A|2757
7SSD|1|1|A|2758
7SSD|1|1|G|2759
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain j
- 50S ribosomal protein L13
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