HL_7SSD_086

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_086 not in the Motif Atlas

Homologous match to HL_6CZR_087

Geometric discrepancy: 0.1485

The information below is about HL_6CZR_087

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7SSD|1|3|C|726
7SSD|1|3|G|727
7SSD|1|3|A|728
7SSD|1|3|A|729
7SSD|1|3|G|730
7SSD|1|3|G|731

Current chains

Chain 3

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S15

Chain W

30S ribosomal protein S18

Chain Z

30S ribosomal protein S21