HL_7SSD_090

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_090 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.164

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7SSD|1|3|C|897
7SSD|1|3|G|898
7SSD|1|3|C|899
7SSD|1|3|A|900
7SSD|1|3|A|901
7SSD|1|3|G|902

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA