HL_7SSD_095

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

7SSD|1|3|C|1136, 7SSD|1|3|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_095 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.4082

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SSD|1|3|G|1134
7SSD|1|3|U|1135
7SSD|1|3|C|1136
7SSD|1|3|C|1137
7SSD|1|3|G|1138
7SSD|1|3|G|1139
7SSD|1|3|C|1140

Current chains

Chain 3

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S9