HL_7SSD_105
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 7SSD|1|6|C|16, 7SSD|1|6|G|18, 7SSD|1|6|G|19, 7SSD|1|6|U|20, 7SSD|1|6|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SSD_105 not in the Motif Atlas
- Homologous match to HL_3WFS_001
- Geometric discrepancy: 0.2567
- The information below is about HL_3WFS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SSD|1|6|C|13
7SSD|1|6|A|14
7SSD|1|6|G|15
7SSD|1|6|C|16
7SSD|1|6|C|17
7SSD|1|6|U|17|||A
7SSD|1|6|G|18
7SSD|1|6|G|19
7SSD|1|6|U|20
7SSD|1|6|A|21
7SSD|1|6|G|22
Current chains
- Chain 6
- tRNA fMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 50S ribosomal protein L1
Coloring options: