HL_7SSD_108

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUGGACGCCAGUCUGCA

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SSD|1|1|U|2137
7SSD|1|1|G|2138
7SSD|1|1|U|2139
7SSD|1|1|G|2140
7SSD|1|1|G|2141
7SSD|1|1|A|2142
7SSD|1|1|C|2143
7SSD|1|1|G|2144
7SSD|1|1|C|2145
7SSD|1|1|C|2146
7SSD|1|1|A|2147
7SSD|1|1|G|2148
7SSD|1|1|U|2149
7SSD|1|1|C|2150
7SSD|1|1|U|2151
7SSD|1|1|G|2152
7SSD|1|1|C|2153
7SSD|1|1|A|2154

Current chains

Chain 1

23S rRNA

Nearby chains

Chain P

30S ribosomal protein S11

Chain a

50S ribosomal protein L1