HL_7SSL_025
3D structure
- PDB id
- 7SSL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUGCUAACGUC
- Length
- 12 nucleotides
- Bulged bases
- 7SSL|1|1|U|958, 7SSL|1|1|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SSL_025 not in the Motif Atlas
- Geometric match to HL_8KAL_008
- Geometric discrepancy: 0.3168
- The information below is about HL_8KAL_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7SSL|1|1|G|953
7SSL|1|1|G|954
7SSL|1|1|U|955
7SSL|1|1|G|956
7SSL|1|1|C|957
7SSL|1|1|U|958
7SSL|1|1|A|959
7SSL|1|1|A|960
7SSL|1|1|C|961
7SSL|1|1|G|962
7SSL|1|1|U|963
7SSL|1|1|C|964
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 50S ribosomal protein L16
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