HL_7SSL_034

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7SSL|1|1|U|1396, 7SSL|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1963

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7SSL|1|1|G|1389
7SSL|1|1|U|1390
7SSL|1|1|U|1391
7SSL|1|1|A|1392
7SSL|1|1|A|1393
7SSL|1|1|U|1394
7SSL|1|1|A|1395
7SSL|1|1|U|1396
7SSL|1|1|U|1397
7SSL|1|1|C|1398

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23