HL_7SSL_039

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

7SSL|1|1|A|1614, 7SSL|1|1|A|1616, 7SSL|1|1|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_039 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1174

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7SSL|1|1|C|1612
7SSL|1|1|G|1613
7SSL|1|1|A|1614
7SSL|1|1|C|1615
7SSL|1|1|A|1616
7SSL|1|1|C|1617
7SSL|1|1|A|1618
7SSL|1|1|G|1619

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain s

50S ribosomal protein L22