HL_7SSL_042

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

7SSL|1|1|U|1729, 7SSL|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_042 not in the Motif Atlas

Homologous match to HL_7A0S_043

Geometric discrepancy: 0.3232

The information below is about HL_7A0S_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SSL|1|1|C|1727
7SSL|1|1|C|1728
7SSL|1|1|U|1729
7SSL|1|1|C|1730
7SSL|1|1|G|1731
7SSL|1|1|C|1732
7SSL|1|1|G|1733

Current chains

Chain 1

23S rRNA

Nearby chains