HL_7SSL_048

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7SSL|1|1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_048 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1393

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7SSL|1|1|G|1949
7SSL|1|1|G|1950
7SSL|1|1|U|1951
7SSL|1|1|A|1952
7SSL|1|1|A|1953
7SSL|1|1|G|1954
7SSL|1|1|U|1955
7SSL|1|1|U|1956
7SSL|1|1|C|1957

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain k

50S ribosomal protein L14