HL_7SSL_050

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

7SSL|1|1|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_050 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3601

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7SSL|1|1|A|2142
7SSL|1|1|C|2143
7SSL|1|1|G|2144
7SSL|1|1|C|2145
7SSL|1|1|C|2146
7SSL|1|1|A|2147
7SSL|1|1|G|2148
7SSL|1|1|U|2149

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

30S ribosomal protein S7