HL_7SSL_063

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_063 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1965

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7SSL|1|1|C|2658
7SSL|1|1|G|2659
7SSL|1|1|A|2660
7SSL|1|1|G|2661
7SSL|1|1|A|2662
7SSL|1|1|G|2663

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain f

50S ribosomal protein L6