HL_7SSL_123

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7SSL|1|3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_123 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3985

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7SSL|1|3|G|462
7SSL|1|3|U|463
7SSL|1|3|U|464
7SSL|1|3|A|465
7SSL|1|3|A|466
7SSL|1|3|U|467
7SSL|1|3|A|468
7SSL|1|3|C|469
7SSL|1|3|C|470

Current chains

Chain 3

16S rRNA

Nearby chains