HL_7SSN_050

3D structure

PDB id

7SSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

7SSN|1|1|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSN_050 not in the Motif Atlas

Geometric match to HL_1H4S_002

Geometric discrepancy: 0.3496

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

7SSN|1|1|A|2142
7SSN|1|1|C|2143
7SSN|1|1|G|2144
7SSN|1|1|C|2145
7SSN|1|1|C|2146
7SSN|1|1|A|2147
7SSN|1|1|G|2148
7SSN|1|1|U|2149

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

30S ribosomal protein S7

Chain P

30S ribosomal protein S11