HL_7SSN_113

3D structure

PDB id

7SSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

7SSN|1|6|C|56

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSN_113 not in the Motif Atlas

Homologous match to HL_6JXM_003

Geometric discrepancy: 0.383

The information below is about HL_6JXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7SSN|1|6|G|53
7SSN|1|6|U|54
7SSN|1|6|U|55
7SSN|1|6|C|56
7SSN|1|6|A|57
7SSN|1|6|A|58
7SSN|1|6|A|59
7SSN|1|6|U|60
7SSN|1|6|C|61

Current chains

Chain 6

tRNA fMet

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA