HL_7SSO_052

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7SSO|1|1|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSO_052 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1226

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7SSO|1|1|C|2248
7SSO|1|1|U|2249
7SSO|1|1|G|2250
7SSO|1|1|G|2251
7SSO|1|1|G|2252
7SSO|1|1|G|2253
7SSO|1|1|C|2254
7SSO|1|1|G|2255
7SSO|1|1|G|2256

Current chains

Chain 1

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27