HL_7SSO_088

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

7SSO|1|3|G|844, 7SSO|1|3|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSO_088 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3416

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7SSO|1|3|C|839
7SSO|1|3|C|840
7SSO|1|3|C|841
7SSO|1|3|U|842
7SSO|1|3|U|843
7SSO|1|3|G|844
7SSO|1|3|A|845
7SSO|1|3|G|846
7SSO|1|3|G|847

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain W

30S ribosomal protein S18