HL_7SSO_102

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCUUGGUAG

Length

11 nucleotides

Bulged bases

7SSO|1|5|C|16, 7SSO|1|5|G|18, 7SSO|1|5|G|19, 7SSO|1|5|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSO_102 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2161

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7SSO|1|5|C|13
7SSO|1|5|A|14
7SSO|1|5|G|15
7SSO|1|5|C|16
7SSO|1|5|U|17
7SSO|1|5|U|17|||A
7SSO|1|5|G|18
7SSO|1|5|G|19
7SSO|1|5|U|20
7SSO|1|5|A|21
7SSO|1|5|G|22

Current chains

Chain 5

tRNA Pro

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain m

50S ribosomal protein L16