HL_7SSW_006

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7SSW|1|1|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSW_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.1269

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7SSW|1|1|G|194
7SSW|1|1|A|195
7SSW|1|1|A|196
7SSW|1|1|A|197
7SSW|1|1|C|198
7SSW|1|1|A|199
7SSW|1|1|U|200
7SSW|1|1|C|201

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15

Chain x

50S ribosomal protein L28