HL_7ST6_116

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUAAUCG

Length

9 nucleotides

Bulged bases

7ST6|1|1|U|1325, 7ST6|1|1|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST6_116 not in the Motif Atlas

Geometric match to HL_3AL0_002

Geometric discrepancy: 0.3506

The information below is about HL_3AL0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15802.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

7ST6|1|1|C|1323
7ST6|1|1|G|1324
7ST6|1|1|U|1325
7ST6|1|1|U|1326
7ST6|1|1|A|1327
7ST6|1|1|A|1328
7ST6|1|1|U|1329
7ST6|1|1|C|1330
7ST6|1|1|G|1331

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22