HL_7ST7_012

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7ST7|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST7_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1383

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7ST7|1|1|G|410
7ST7|1|1|G|411
7ST7|1|1|A|412
7ST7|1|1|C|413
7ST7|1|1|C|414
7ST7|1|1|A|415
7ST7|1|1|U|416
7ST7|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15