HL_7ST7_036

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

7ST7|1|1|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST7_036 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.2097

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7ST7|1|1|G|1492
7ST7|1|1|C|1493
7ST7|1|1|A|1494
7ST7|1|1|A|1495
7ST7|1|1|A|1496
7ST7|1|1|U|1497
7ST7|1|1|C|1498

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2