HL_7ST7_050

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

7ST7|1|1|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST7_050 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2999

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7ST7|1|1|A|2142
7ST7|1|1|C|2143
7ST7|1|1|G|2144
7ST7|1|1|C|2145
7ST7|1|1|C|2146
7ST7|1|1|A|2147
7ST7|1|1|G|2148
7ST7|1|1|U|2149

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

30S ribosomal protein S7

Chain P

30S ribosomal protein S11