3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
7ST7|1|1|G|2250
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ST7_052 not in the Motif Atlas
Homologous match to HL_7A0S_052
Geometric discrepancy: 0.1471
The information below is about HL_7A0S_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

7ST7|1|1|C|2248
7ST7|1|1|U|2249
7ST7|1|1|G|2250
7ST7|1|1|G|2251
7ST7|1|1|G|2252
7ST7|1|1|G|2253
7ST7|1|1|C|2254
7ST7|1|1|G|2255
7ST7|1|1|G|2256

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain m
50S ribosomal protein L16
Chain w
50S ribosomal protein L27

Coloring options:


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