HL_7ST7_052
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 7ST7|1|1|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ST7_052 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1471
- The information below is about HL_7A0S_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7ST7|1|1|C|2248
7ST7|1|1|U|2249
7ST7|1|1|G|2250
7ST7|1|1|G|2251
7ST7|1|1|G|2252
7ST7|1|1|G|2253
7ST7|1|1|C|2254
7ST7|1|1|G|2255
7ST7|1|1|G|2256
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L27
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