HL_7ST7_078
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ST7_078 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.1288
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7ST7|1|3|A|320
7ST7|1|3|A|321
7ST7|1|3|C|322
7ST7|1|3|U|323
7ST7|1|3|G|324
7ST7|1|3|A|325
7ST7|1|3|G|326
7ST7|1|3|A|327
7ST7|1|3|C|328
7ST7|1|3|A|329
7ST7|1|3|C|330
7ST7|1|3|G|331
7ST7|1|3|G|332
7ST7|1|3|U|333
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain U
- 30S ribosomal protein S16
- Chain Y
- 30S ribosomal protein S20
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